First of all: oceania (Hawaiian kingdom, Tu'i Tonga empire, Rapa Nui) , subsaharan africa (Benin, Nok, Ghana kingdom, Songhai, Mali, Congo, Zanzibar) and the americas (Aztec Triple Alliance, Maya kingdoms and city-states, Zapotec empire and kingdoms, Mixtec empire and city-states, Olmec, Teotihuacan empire, Tarascan empire, Tahue kingdom, Colima city-state, Huastec city-states, Nicarao kingdoms, Pipil kingdoms, Hopewell, Ancient Puebloans/Anazasi, Tlingit, Haudenosaunee Confederacy, Cahokia, Caddoan, Plaquemine, Adena, Inca empire, Mochica, Muisca confederacy, Quitu, Nazca, Wari, Tiwanaku empire, Kuhikugu, Marajo) all had civilizations.
Secondly: They did not exactly live symbiotically with nature. In most cases they shaped nature to suit their needs as is the case with controlling the populations of certain birds, the movements of bison through intense forest clearing, clearing forests to utilize them as large orchards and gardens, basically on their way to terraforming the amazon rainforest, irrigations to control floods, canals and aqueducts to move water directions, practicing various forms of agriculture from terrace farming, to chinampas, and milpa systems etc. As for domesticated animals, they already had the dog, turkeys and the Maya semi domesticated the deer.