The Rune Arts are sorta all over the place, man.
>Rune of Flame
From 5th level on, that's weaker than a cantrip, and you can only do it three times per rest.
>Rune of Phantasm
>ignore any AC bonuses the creature has aside from what they'd have from their Dexterity modifier or Natural Armor
So many things here. First of all, I get what you're going for, but in game mechanics terms that's nonsense.
You're forcing the DM to make calculations on the fly. "Okay, so their Dexterity modifier is +2, so their AC is 12" isn't a BIG calculation, but it's annoying and it adds up. Also most enemies have natural armor, so if you keep this, it should affect natural armor.
More damningly, though, that bonus usually isn't much bigger than gaining advantage on the attack roll would be. So again, this isn't really better than a cantrip but it's much more limited.
>Rune of Frost
>Rune of Draining
These are okay. They're roughly equivalent to 1st-level spells (Rune of Draining to False Life, Rune of Frost to a weaker version of Shield of Faith). Though without the Overload, I don't really get how "hit them with a weapon attack and get +1 to AC" ties in with ice.
>Rune of Steel
>Rune of Fervor
Much, much more useful than the others. Would you rather do 1d8 (average 4.5) damage to one enemy with Rune of Flame or would you rather do 5 damage per turn to every enemy within 10 feet for a minute? Would you rather reduce the enemy's chance of hitting by 5 percentage points with Rune of Frost or decrease the damage you take by 17% with Rune of Steel (for a Medium creature with a 2d6 weapon and 20 Strength--it's more for weaker attacks)?
If I were you, I'd probably reshape the Rune Arts from the ground up in a way that reinforces the ranger-as-arcane-spellcaster dynamic. Make it a benefit that activates when you cast a spell like the Favored Soul's self-healing deal, except stronger and more versatile to compensate for the ranger's much smaller reserve of spell slots.