I too liked them, specially because I bought so much into the scientific discourse that I would later renounce. That is to say, it's not so much that the scientific method is in any way illegitimate or at fault, just that the ideological discourse that usually follows it and puts science in the place of a saviour is not much different from the religions science often criticize. Even if science is based on facts, and it is, in its disregard for the humanities (ie philosophy, linguistics, psychanalysis, history) it denies itself the chance of looking at itself critically, historically and allows for new objects to take the same position that was once frowned upon, and worse of all, without making a sound (ideology). If religion is a fiction based on "lies", science is a fiction based on facts, which is troublesome not because there is any discourse that isn't fiction, the true saying which either could have been missing (there is no such thing), but because the facts help conceal and protect themselves from looking at their own fiction.
It's also not simply an accident that the scientific position has taken over religion and that by chance it has fallen for similar problems. Science has been feeding itself, not by the facts alone, but by the position these facts take in regards to its counterparts. In other words, the questions and the myths remain unchanged while science offers new answers, therefore being guided by previous questions. Neurology and behaviourism for psychanalysis, Nature for God, technology for social change, atheism for theism. It is not enough of a radical breakthrough. Science take the position that "whatever question you have, we can answer it better", which at first glance seems arrogant until it actually answers it better. Except on a second look it also hides a fragile position in which it disregards the importance of the question by itself, its origin, its causes and assumptions. To science, questions are made to be answered. In this urge to do it, the questions are quite often not questioned back.
A lot of scientists are still taking Nature for Law, taking history for progression, they are still on a religious mission towards Truth and can't see past their own position in society.There is a common atheist argument in which every theist religious person is an atheist to someone else's God. In the same level, one could say that a lot of atheists are only atheists to one or a few Gods. If you think you've found a substitute for God, or a substitute for religion, you are still with God, you are still with religion. It's not enough to put something else in its place, but to question the place itself and to understand how that place has developped over the years. There are christians that, if you look through the language used, argue for much more atheist positions.
It's all very interesting up to a certain point, but I hope you see other sides on the matter as well.